Publikationer

2024

Rox K, Jansen R, Lukežič T, Greweling-Pils M, Herrmann J, Miethke M, Hüttel S, Hennessen F, Abou Fayad A, Holzhausen C, Lundberg CV, Teague J, Sudarman E, Bülter L, Hesterkamp T, Stadler M, Brönstrup M, Müller R. Pharmacokinetic and pharmacodynamic evaluation of the atypical tetracyclines chelocardin and amidochelocardin in murine infection models. Microbiol Spectr. 2024 Jan 11;12(1):e0128923. doi: 10.1128/spectrum.01289-23. Epub 2023 Dec 4. PMID: 38047701; PMCID: PMC10783034.

Årdal C, Baraldi E, Busse R, Castro R, Ciabuschi F, Cisneros JM, Gyssens IC, Harbarth S, Kostyanev T, Lacotte Y, Magrini N, McDonnell A, Monnier AA, Moon S, Mossialos E, Peñalva G, Ploy MC, Radulović M, Ruiz AA, Røttingen JA, Sharland M, Tacconelli E, Theuretzbacher U, Vogler S, Sönksen UW, Åkerfeldt K, Cars O, O'Neill J. Transferable exclusivity voucher: a flawed incentive to stimulate antibiotic innovation. Lancet. 2024 Jan 13;403(10422):e2-e4. doi: 10.1016/S0140-6736(23)00282-9. Epub 2023 Feb 9. PMID: 36774936. 

2023

Agergaard CN, Porsbo LJ, Sydenham TV, Hansen SGK, Steinke K, Larsen SL, Helgason KO, Hansen F, Karstensen KT, Henius AE, Holzknecht BJ, Søes L, Schønning K, Wang M, Ank N, Halldórsdóttir AM, Guðlaugsson Ó, Hammerum AM, Kjerulf A, Kristensen B, Hasman H, Justesen US. Contaminated dicloxacillin capsules as the source of an NDM-5/OXA-48-producing Enterobacter hormaechei ST79 outbreak, Denmark and Iceland, 2022 and 2023. Euro Surveill. 2023 Mar;28(9):2300108. doi: 10.2807/1560-7917.ES.2023.28.9.2300108. PMID: 36862098; PMCID: PMC9983070.

Ba X, Raisen CL, Restif O, Cavaco LM, Vingsbo Lundberg C, Lee JYH, Howden BP, Bartels MD, Strommenger B, Harrison EM, Larsen AR, Holmes MA, Larsen J. Cryptic susceptibility to penicillin/β-lactamase inhibitor combinations in emerging multidrug-resistant, hospital-adapted Staphylococcus epidermidis lineages. Nat Commun. 2023 Oct 14;14(1):6479. doi: 10.1038/s41467-023-42245-y. PMID: 37838722; PMCID: PMC10576800.

Bortolaia V, Guardabassi L. Zoonotic transmission of antimicrobial-resistant enterococci: a threat to public health or an overemphasized risk? In Sing, A. (ed) Zoonoses: infections affecting humans and animals, 2nd ed. Springer, Cham, Switzerland 2023; 579-610. doi: 10.1007/978-3-030-85877-3_16-1.

Cotter CJ, Ferradas C, Ludwig S, Dalton K, Larsen J, Laucks D, Iverson SA, Baron P, Tolomeo PC, Brazil AM, Ferguson JM, Lautenbach E, Rankin SC, Morris DO, Davis MF. Risk factors for meticillin-resistant Staphylococcus aureus (MRSA) carriage in MRSA-exposed household pets. Vet Dermatol. 2023 Feb;34(1):22-27. doi: 10.1111/vde.13135. Epub 2022 Nov 4. PMID: 36331035; PMCID: PMC11168721.

Dieperink SS, Glintborg B, Oestergaard LB, Nørgaard M, Benfield T, Mehnert F, Petersen A, Torp-Pedersen C, Hetland ML. Risk of Staphylococcus aureus bacteraemia in patients with rheumatoid arthritis and the effect of orthopaedic implants on the risk: a nationwide observational cohort study. Scand J Rheumatol. 2023 May;52(3):250-258. doi: 10.1080/03009742.2022.2049057. Epub 2022 Apr 20. PMID: 35442139.

Galuszka JE, Thomsen K, Knudsen JD, Stenkjaer RL, Nielsen R, Nielsen KL, Petersen A, Holzknecht BJ, Damkjaer Bartels M, Breindahl M, Aunsholt L. Risk factors for methicillin-resistant Staphylococcus aureus colonization in a level-IV neonatal intensive care unit: a retrospective study. Antimicrob Steward Healthc Epidemiol. 2023 Oct 31;3(1):e194. doi: 10.1017/ash.2023.482. PMID: 38028927; PMCID: PMC10654989.

Hansen F, Porsbo LJ, Frandsen TH, Kaygisiz ANS, Roer L, Henius AE, Holzknecht BJ, Søes L, Schønning K, Røder BL, Justesen US, Østergaard C, Dzajic E, Wang M, Ank N, Higgins PG, Hasman H, Hammerum AM. Characterisation of carbapenemase-producing Acinetobacter baumannii isolates from Danish patients 2014-2021: detection of a new international clone - IC11. Int J Antimicrob Agents. 2023 Aug;62(2):106866. doi: 10.1016/j.ijantimicag.2023.106866. Epub 2023 May 25. PMID: 37244424.

Hansen SGK, Roer L, Karstensen KT, Hoegh SV, Hansen F, Klein K, Rosenvinge FS, Holm A, Skov MN, Hammerum AM, Hasman H. Vancomycin-sensitive Enterococcus faecium bacteraemia - hospital transmission and mortality in a Danish university hospital. J Med Microbiol. 2023 Jul;72(7). doi: 10.1099/jmm.0.001731. PMID: 37436043.

Hendriksen RS, Cavaco LM, Guerra B, Bortolaia V, Agersø Y, Svendsen CA, Nielsen HN, Kjeldgaard JS, Pedersen SK, Fertner M, Hasman H. Evaluation and validation of laboratory procedures for the surveillance of ESBL-, AmpC-, and carbapenemase-producing Escherichia coli from fresh meat and caecal samples. Front Microbiol. 2023 Aug 9;14:1229542. doi: 10.3389/fmicb.2023.1229542. PMID: 37621395; PMCID: PMC10445139.

Kemp M, Nielsen XC, Bartels MD, Hasman H, Nielsen EM. Whole genome sequencing for surveillance of bacterial infectious illnesses. Ugeskr Laeger. 2023 May 29;185(22):V11220690. Danish. PMID: 37264858.

Krogsgaard LW, Espenhain L, Tribler S, Sværke Jørgensen C, Hansen CH, Møller FT, Glode Helmuth I, Sönksen UW, Vangsted AM, Ullum H, Ethelberg S. Seroprevalence of SARS-CoV-2 Antibodies in Denmark: results of two nationwide population-based surveys, February and May 2021. Infect Drug Resist. 2023 Jan 15;16:301-312. doi: 10.2147/IDR.S383491. PMID: 36683911; PMCID: PMC9851711.

Larsen AR, Fitzgerald JR, Larsen J. Methicillin-resistant Staphylococcus aureus in food animals. In Sing, A. (ed) Zoonoses: infections affecting humans and animals, 2nd ed. Springer, Cham, Switzerland. 2023; 611-626. doi: 10.1007/978-3-030-85877-3_51-1. 

Leinweber H, Sieber RN, Bojer MS, Larsen J, Ingmer H. Fluoroquinolone resistance does not facilitate phage Φ13 integration or excision in Staphylococcus aureus. Access Microbiol. 2023 Jun 9;5(6):acmi000583.v4. doi: 10.1099/acmi.0.000583.v4. PMID: 37424547; PMCID: PMC10323784.

Linkevicius M, Bonnin RA, Alm E, Svartström O, Apfalter P, Hartl R, Hasman H, Roer L, Räisänen K, Dortet L, Pfennigwerth N, Hans JB, Tóth Á, Buzgó L, Cormican M, Delappe N, Monaco M, Giufrè M, Hendrickx AP, Samuelsen Ø, Pöntinen AK, Caniça M, Manageiro V, Oteo-Iglesias J, Pérez-Vázquez M, Westmo K, Mäkitalo B, Palm D, Monnet DL, Kohlenberg A. Rapid cross-border emergence of NDM-5-producing Escherichia coli in the European Union/European Economic Area, 2012 to June 2022. Euro Surveill. 2023 May;28(19):2300209. doi: 10.2807/1560-7917.ES.2023.28.19.2300209. PMID: 37166762; PMCID: PMC10176832.

Mikkelsen K, Bowring JZ, Ng YK, Svanberg Frisinger F, Maglegaard JK, Li Q, Sieber RN, Petersen A, Andersen PS, Rostøl JT, Høyland-Kroghsbo NM, Ingmer H. An endogenous Staphylococcus aureus CRISPR-Cas system limits phage proliferation and is efficiently excised from the genome as part of the SCCmec cassette. Microbiol Spectr. 2023 Aug 17;11(4):e0127723. doi: 10.1128/spectrum.01277-23. Epub 2023 Jul 5. PMID: 37404143; PMCID: PMC10434264.

Moura P, Borck Høg B, Alban L, Sönksen UW, Ribeiro Duarte AS, Sandberg M. Evaluating the OH-EpiCap tool using the Danish integrated surveillance program for AMU and AMR as a case study. Front Public Health. 2023 Nov 20;11:1127701. doi: 10.3389/fpubh.2023.1127701. PMID: 38054067; PMCID: PMC10694429.

Mwatondo A, Rahman-Shepherd A, Hollmann L, Chiossi S, Maina J, Kurup KK, Hassan OA, Coates B, Khan M, Spencer J, Mutono N, Thumbi SM, Muturi M, Mutunga M, Arruda LB, Akhbari M, Ettehad D, Ntoumi F, Scott TP, Nel LH, Ellis-Iversen J, Sönksen UW, Onyango D, Ismail Z, Simachew K, Wolking D, Kazwala R, Sijali Z, Bett B, Heymann D, Kock R, Zumla A, Dar O. A global analysis of One Health Networks and the proliferation of One Health collaborations. Lancet. 2023 Feb 18;401(10376):605-616. doi: 10.1016/S0140-736(22)01596-3. Epub 2023 Jan 19. PMID: 36682370.

Nielsen KL, Sørensen M, Hertz FB, Misiakou MA, Hasman H, Häussler S, Helleberg M, Schønning K. Within-patient horizontal transfer of pOXA-48 from a hypervirulent Klebsiella pneumoniae SL218 to Serratia marcescens following spread of the K. pneumoniae isolate among hospitalised patients, Denmark, 2021. Euro Surveill. 2023 Apr;28(17):2300196. doi: 10.2807/1560-7917.ES.2023.28.17.2300196. PMID: 37103784; PMCID: PMC10283472.

Rinnov MR, Gerner T, Halling AS, Liljendahl MS, Ravn NH, Knudgaard MH, Trautner S, Skov L, Thomsen SF, Egeberg A, Jakasa I, Kezic S, Petersen A, Larsen AR, Dam-Nielsen C, Jarløv JO, Thyssen JP. The association between Staphylococcus aureus colonization on cheek skin at 2 months and subsequent atopic dermatitis in a prospective birth cohort. Br J Dermatol. 2023 Nov 16;189(6):695-701. doi: 10.1093/bjd/ljad249. PMID: 37480337.

Stolberg RS, Hansen F, Porsbo LJ, Karstensen KT, Roer L, Holzknecht BJ, Hansen KH, Schønning K, Wang M, Justesen US, Røder BL, Thomsen P, Skov MN, Hammerum AM, Hasman H. Genotypic characterisation of carbapenemase-producing organisms obtained in Denmark from patients associated with the war in Ukraine. J Glob Antimicrob Resist. 2023 Sep;34:15-17. doi: 10.1016/j.jgar.2023.06.002. Epub 2023 Jun 12. PMID: 37315739.

Tams KW, Larsen I, Hansen JE, Spiegelhauer H, Strøm-Hansen AD, Rasmussen S, Ingham AC, Kalmar L, Kean IRL, Angen Ø, Holmes MA, Pedersen K, Jelsbak L, Folkesson A, Larsen AR, Strube ML. The effects of antibiotic use on the dynamics of the microbiome and resistome in pigs. Anim Microbiome. 2023 Aug 21;5(1):39. doi: 10.1186/s42523-023-00258-4. PMID: 37605221; PMCID: PMC10440943.

Valcek A, Sismova P, Nesporova K, Overballe-Petersen S, Bitar I, Jamborova I, Kant A, Hrabak J, Wagenaar JA, Madec JY, Damborg P, van Duijkeren E, Ewers C, Hordijk J, Hasman H, Brouwer MSM, Dolejska M. Horsing around: Escherichia coli ST1250 of equine origin harbouring epidemic IncHI1/ST9 plasmid with blaCTX-M-1 and an operon for short-chain fructooligosaccharides metabolism. Antimicrob Agents Chemother. 2023 May 1;65(5):e02556-20. doi: 10.1128/AAC.02556-20. Epub 2021 Feb 22. PMID: 33619063; PMCID: PMC8092906.

van Soest TM, Søndermølle MB, Brouwer MC, Chekrouni N, Larsen AR, Petersen A, van Sorge NM, Nielsen H, van de Beek D, Bodilsen J; DASGIB study group. Community-acquired Staphylococcus aureus meningitis in adults. J Infect. 2023 Mar;86(3):239-244. doi: 10.1016/j.jinf.2023.01.022. Epub 2023 Jan 20. PMID: 36682629.

Vitt AR, Sørensen MCH, Bortolaia V, Brøndsted L. A representative collection of commensal extended-spectrum- and AmpC-β-lactamase-producing Escherichia coli of animal origin for phage sensitivity studies. Phage (New Rochelle). 2023 Mar 1;4(1):35-45. doi: 10.1089/phage.2023.0002. Epub 2023 Mar 17. PMID: 37214655; PMCID: PMC10196081.

Xu L, Henriksen C, Mebus V, Guérillot R, Petersen A, Jacques N, Jiang JH, Derks RJE, Sánchez-López E, Giera M, Leeten K, Stinear TP, Oury C, Howden BP, Peleg AY, Frees D. A clinically selected Staphylococcus aureus clpP mutant survives daptomycin treatment by reducing binding of the antibiotic and adapting a rod-shaped morphology. Antimicrob Agents Chemother. 2023 Jun 15;67(6):e0032823. doi: 10.1128/aac.00328-23. Epub 2023 May 15. PMID: 37184389; PMCID: PMC10269151.

2022

Aldea I, Gibello A, Hernández M, Leekitcharoenphon P, Bortolaia V, Moreno MA. Clonal and plasmid-mediated flow of ESBL/AmpC genes in Escherichia coli in a commercial laying hen farm. Vet Microbiol. 2022 Jul;270:109453. doi: 10.1016/j.vetmic.2022.109453. Epub 2022 May 16. PMID: 35640410.

Aranzana-Climent V, Hughes D, Cao S, Tomczak M, Urbas M, Zabicka D, Vingsbo Lundberg C, Hansen J, Lindberg J, Hobbie SN, Friberg LE. Translational in vitro and in vivo PKPD modelling for apramycin against Gram-negative lung pathogens to facilitate prediction of human efficacious dose in pneumonia. Clin Microbiol Infect. 2022 Oct;28(10):1367-1374. doi: 10.1016/j.cmi.2022.05.003. Epub 2022 May 20. PMID: 35598857.

Arrazuria R, Kerscher B, Huber KE, Hoover JL, Lundberg CV, Hansen JU, Sordello S, Renard S, Aranzana-Climent V, Hughes D, Gribbon P, Friberg LE, Bekeredjian-Ding I. Expert workshop summary: Advancing toward a standardized murine model to evaluate treatments for antimicrobial resistance lung infections. Front Microbiol. 2022 Sep 8;13:988725. doi: 10.3389/fmicb.2022.988725. PMID: 36160186; PMCID: PMC9493304.

Arrazuria R, Kerscher B, Huber KE, Hoover JL, Lundberg CV, Hansen JU, Sordello S, Renard S, Aranzana-Climent V, Hughes D, Gribbon P, Friberg LE, Bekeredjian-Ding I. Variability of murine bacterial pneumonia models used to evaluate antimicrobial agents. Front Microbiol. 2022 Sep 8;13:988728. doi: 10.3389/fmicb.2022.988728. PMID: 36160241; PMCID: PMC9493352.

Baede VO, David MZ, Andrasevic AT, Blanc DS, Borg M, Brennan G, Catry B, Chabaud A, Empel J, Enger H, Hallin M, Ivanova M, Kronenberg A, Kuntaman K, Larsen AR, Latour K, Lindsay JA, Pichon B, Santosaningsih D, Schouls LM, Vandenesch F, Werner G, Żabicka D, Žemličková H, Seifert H, Vos MC; MRSA Surveillance Worldwide Study Group (ISAC), the ESCMID Study Group for Nosocomial Infections (ESGNI), the ESCMID Study Group for Staphylococci and Staphylococcal Diseases (ESGS). MRSA surveillance programmes worldwide: moving towards a harmonised international approach. Int J Antimicrob Agents. 2022 Mar;59(3):106538. doi: 10.1016/j.ijantimicag.2022.106538. Epub 2022 Jan 26. PMID: 35091055.

Bigseth RS, Sandholdt H, Petersen A, Østergaard C, Benfield T, Thorlacius-Ussing L. Comparable effectiveness of cefuroxime and piperacillin-tazobactam as empirical therapy for methicillin-susceptible Staphylococcus aureus bacteremia. Microbiol Spectr. 2022 Jun 29;10(3):e0153021. doi: 10.1128/spectrum.01530-21. Epub 2022 Apr 19. PMID: 35438533; PMCID: PMC9241907.

Brem J, Panduwawala T, Hansen JU, Hewitt J, Liepins E, Donets P, Espina L, Farley AJM, Shubin K, Campillos GG, Kiuru P, Shishodia S, Krahn D, Leśniak RK, Schmidt Adrian J, Calvopiña K, Turrientes MC, Kavanagh ME, Lubriks D, Hinchliffe P, Langley GW, Aboklaish AF, Eneroth A, Backlund M, Baran AG, Nielsen EI, Speake M, Kuka J, Robinson J, Grinberga S, Robinson L, McDonough MA, Rydzik AM, Leissing TM, Jimenez-Castellanos JC, Avison MB, Da Silva Pinto S, Pannifer AD, Martjuga M, Widlake E, Priede M, Hopkins Navratilova I, Gniadkowski M, Belfrage AK, Brandt P, Yli-Kauhaluoma J, Bacque E, Page MGP, Björkling F, Tyrrell JM, Spencer J, Lang PA, Baranczewski P, Cantón R, McElroy SP, Jones PS, Baquero F, Suna E, Morrison A, Walsh TR, Schofield CJ. Imitation of β-lactam binding enables broad-spectrum metallo-β-lactamase inhibitors. Nat Chem. 2022 Jan;14(1):15-24. doi: 10.1038/s41557-021-00831-x. Epub 2021 Dec 13. PMID: 34903857.

Butt JH, Fosbøl EL, Gerds TA, Iversen K, Bundgaard H, Bruun NE, Larsen AR, Petersen A, Andersen PS, Skov RL, Østergaard L, Havers-Borgersen E, Gislason GH, Torp-Pedersen C, Køber L, Olesen JB. Ticagrelor and the risk of Staphylococcus aureus bacteraemia and other infections. Eur Heart J Cardiovasc Pharmacother. 2022 Jan 5;8(1):13-19. doi: 10.1093/ehjcvp/pvaa099. PMID: 32750138.

Coppens J, Xavier BB, Vlaeminck J, Larsen J, Lammens C, Van Puyvelde S, Goossens H, Larsen AR, Malhotra-Kumar S. Genomic analysis of methicillin-resistant Staphylococcus aureus clonal complex 239 isolated from Danish patients with and without an international travel history. Front Microbiol. 2022 Nov 24;13:1016829. doi: 10.3389/fmicb.2022.1016829. PMID: 36504833; PMCID: PMC9730231.

Dieperink SS, Mehnert F, Nørgaard M, Oestergaard LB, Benfield T, Petersen A, Torp-Pedersen C, Glintborg B, Hetland ML. Antirheumatic treatment, disease activity and risk of Staphylococcus aureus bacteraemia in rheumatoid arthritis: a nationwide nested case-control study. RMD Open. 2022 Dec;8(2):e002636. doi: 10.1136/rmdopen-2022-002636. PMID: 36517186; PMCID: PMC9756197.

Eriksen HB, Petersen A, Pedersen M, Overballe-Petersen S, Larsen AR, Holzknecht BJ. Possible misinterpretation of penicillin susceptibility in Staphylococcus aureus blood isolate due to in vitro loss of the blaZ gene. Eur J Clin Microbiol Infect Dis. 2022 Jan;41(1):163-167. doi: 10.1007/s10096-021-04344-w. Epub 2021 Sep 16. PMID: 34529167.

European Food Safety Authority (EFSA); Aerts M, Battisti A, Hendriksen R, Larsen J, Nilsson O, Abrahantes JC, Guerra B, Papanikolaou A, Beloeil PA. Technical specifications for a baseline survey on the prevalence of methicillin-resistant Staphylococcus aureus (MRSA) in pigs. EFSA J. 2022 Oct 19;20(10):e07620. doi: 10.2903/j.efsa.2022.7620. PMID: 36267542; PMCID: PMC9579990.

Gerlach D, Sieber RN, Larsen J, Krusche J, De Castro C, Baumann J, Molinaro A, Peschel A. Horizontal transfer and phylogenetic distribution of the immune evasion factor tarP. Front Microbiol. 2022 Oct 28;13:951333. doi: 10.3389/fmicb.2022.951333. PMID: 36386695; PMCID: PMC9650247.

Hansen MS, Jensen TK, Hjulsager CK, Angen Ø, Riber U, Nielsen J, Heegaard PMH, Larsen LE. Experimental infection of high health pigs with porcine circovirus type 2 (PCV2) and Lawsonia intracellularis. Front Vet Sci. 2022 Oct 6;9:994147. doi: 10.3389/fvets.2022.994147. PMID: 36277064; PMCID: PMC9583870.

Larsen J, Raisen CL, Ba X, Sadgrove NJ, Padilla-González GF, Simmonds MSJ, Loncaric I, Kerschner H, Apfalter P, Hartl R, Deplano A, Vandendriessche S, Černá Bolfíková B, Hulva P, Arendrup MC, Hare RK, Barnadas C, Stegger M, Sieber RN, Skov RL, Petersen A, Angen Ø, Rasmussen SL, Espinosa-Gongora C, Aarestrup FM, Lindholm LJ, Nykäsenoja SM, Laurent F, Becker K, Walther B, Kehrenberg C, Cuny C, Layer F, Werner G, Witte W, Stamm I, Moroni P, Jørgensen HJ, de Lencastre H, Cercenado E, García-Garrote F, Börjesson S, Hæggman S, Perreten V, Teale CJ, Waller AS, Pichon B, Curran MD, Ellington MJ, Welch JJ, Peacock SJ, Seilly DJ, Morgan FJE, Parkhill J, Hadjirin NF, Lindsay JA, Holden MTG, Edwards GF, Foster G, Paterson GK, Didelot X, Holmes MA, Harrison EM, Larsen AR. Emergence of methicillin resistance predates the clinical use of antibiotics. Nature. 2022 Feb;602(7895):135-141. doi: 10.1038/s41586-021-04265-w. Epub 2022 Jan 5. PMID: 34987223; PMCID: PMC8810379.

List KK, Kolpen M, Kragh KN, Charbon G, Radmer S, Hansen F, Løbner-Olesen A, Frimodt-Møller N, Hertz FB. Synergy between mecillinam and ceftazidime/avibactam or avibactam against multi-drug-resistant carbapenemase-producing Escherichia coli and Klebsiella pneumoniae. Antibiotics (Basel). 2022 Sep 20;11(10):1280. doi: 10.3390/antibiotics11101280. PMID: 36289937; PMCID: PMC9599007.

Mader R; EU-JAMRAI; Bourély C, Amat JP, Broens EM, Busani L, Callens B, Crespo-Robledo P, Damborg P, Filippitzi ME, Fitzgerald W, Grönthal T, Haenni M, Heuvelink A, van Hout J, Kaspar H, Muñoz Madero C, Norström M, Pedersen K, Pokludova L, Dal Pozzo F, Slowey R, Urdahl AM, Vatopoulos A, Zafeiridis C, Madec JY. Defining the scope of the European Antimicrobial Resistance Surveillance network in Veterinary medicine (EARS-Vet): a bottom-up and One Health approach. J Antimicrob Chemother. 2022 Feb 23;77(3):816-826. doi: 10.1093/jac/dkab462. PMID: 35022739; PMCID: PMC8864999.

Mollerup S, Worning P, Petersen A, Bartels MD. spa typing of methicillin-resistant Staphylococcus aureus based on whole-genome sequencing: the impact of the assembler. Microbiol Spectr. 2022 Dec 21;10(6):e0218922. doi: 10.1128/spectrum.02189-22. Epub 2022 Nov 9. PMID: 36350148; PMCID: PMC9769676.

Nielsen RT, Dalby T, Emborg HD, Larsen AR, Petersen A, Torpdahl M, Hoffmann S, Vestergaard LS, Valentiner-Branth P. COVID-19 preventive measures coincided with a marked decline in other infectious diseases in Denmark, spring 2020. Epidemiol Infect. 2022 Jul 28;150:e138. doi: 10.1017/S0950268822001145. PMID: 35899864; PMCID: PMC9343452.

Nobili G, La Bella G, Basanisi MG, Damato AM, Coppola R, Migliorelli R, Rondinone V, Leekitcharoenphon P, Bortolaia V, La Salandra G. Occurrence and characterisation of colistin-resistant Escherichia coli in raw meat in Southern Italy in 2018-2020. Microorganisms. 2022 Sep 8;10(9):1805. doi: 10.3390/microorganisms10091805. PMID: 36144407; PMCID: PMC9502372.

Nygaard U, Petersen A, Larsen AR, Rytter MJH, Hartling U, Kirkby N, Hansen RN, Nielsen AB, Lundstrøm K, Holm M, Vissing NH. Fatal SARS-CoV-2-associated Panton-Valentine leukocidin-producing Staphylococcal bacteremia: a nationwide multicenter cohort study. Pediatr Infect Dis J. 2022 Apr 1;41(4):e142-e145. doi: 10.1097/INF.0000000000003476. PMID: 35093994.

Rakonjac B, Lepšanović Z, Šuljagić V, Jovčić B, Kojić M, Larsen AR, Đurić M, Ćirković I. Predominance of t355/ST152/SCCmec V clonal type among PVL-positive MRSA isolates in a tertiary care hospital in Belgrade, Serbia. PLoS One. 2022 Sep 8;17(9):e0273474. doi: 10.1371/journal.pone.0273474. PMID: 36074767; PMCID: PMC9455871.

Rebelo AR, Bortolaia V, Leekitcharoenphon P, Hansen DS, Nielsen HL, Ellermann-Eriksen S, Kemp M, Røder BL, Frimodt-Møller N, Søndergaard TS, Coia JE, Østergaard C, Westh H, Aarestrup FM. One Day in Denmark: comparison of phenotypic and genotypic antimicrobial susceptibility testing in bacterial isolates from clinical settings. Front Microbiol. 2022 Jun 10;13:804627. doi: 10.3389/fmicb.2022.804627. PMID: 35756053; PMCID: PMC9226621.

Rebelo AR, Ibfelt T, Bortolaia V, Leekitcharoenphon P, Hansen DS, Nielsen HL, Ellermann-Eriksen S, Kemp M, Røder BL, Frimodt-Møller N, Søndergaard TS, Coia JE, Østergaard C, Pedersen M, Westh H, Aarestrup FM. One Day in Denmark: nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods. PloS One. 2022 Feb 11;17(2):e0261999. doi: 10.1371/journal.pone.0261999. PMID: 35148318; PMCID: PMC8836320.

Weiss A, Delavenne E, Matias C, Lagler H, Simon D, Li P, Hansen JU, Dos Santos TP, Jana B, Priemel P, Bangert C, Bauer M, Eberl S, Nussbaumer-Pröll A, Anne Österreicher Z, Matzneller P, Quint T, Weber M, Nielsen HM, Rades T, Johansen HK, Westh H, Kim W, Mylonakis E, Friis C, Guardabassi L, Pace J, Lundberg CV, M'Zali F, Butty P, Sørensen N, Nielsen HB, Toft-Kehler R, Guttman-Yassky E, Stingl G, Zeitlinger M, Sommer M. Topical niclosamide (ATx201) reduces Staphylococcus aureus colonization and increases Shannon diversity of the skin microbiome in atopic dermatitis patients in a randomized, double-blind, placebo-controlled Phase 2 trial. Clin Transl Med. 2022 May;12(5):e790. doi: 10.1002/ctm2.790. PMID: 35522900; PMCID: PMC9076020.

Widerström M, Stegger M, Johansson A, Gurram BK, Larsen AR, Wallinder L, Edebro H, Monsen T. Heterogeneity of Staphylococcus epidermidis in prosthetic joint infections: time to reevaluate microbiological criteria? Eur J Clin Microbiol Infect Dis. 2022 Jan;41(1):87-97. doi: 10.1007/s10096-021-04352-w. Epub 2021 Oct 2. PMID: 34599708; PMCID: PMC8732909.

Yebra G, Harling-Lee JD, Lycett S, Aarestrup FM, Larsen G, Cavaco LM, Seo KS, Abraham S, Norris JM, Schmidt T, Ehlers MM, Sordelli DO, Buzzola FR, Gebreyes WA, Gonçalves JL, Dos Santos MV, Zakaria Z, Rall VLM, Keane OM, Niedziela DA, Paterson GK, Holmes MA, Freeman TC, Fitzgerald JR. Multiclonal human origin and global expansion of an endemic bacterial pathogen of livestock. Proc Natl Acad Sci U S A. 2022 Dec 13;119(50):e2211217119. doi: 10.1073/pnas.2211217119. Epub 2022 Dec 5. PMID: 36469788; PMCID: PMC9897428.

2021

Andrews A, Budd EL, Hendrick A, Ashiru-Oredope D, Beech E, Hopkins S, Gerver S, Muller-Pebody B, The Amu Covid-Stakeholder Group. Surveillance of Antibacterial Usage during the COVID-19 pandemic in England, 2020. Antibiotics (Basel). 2021 Jul 10;10(7):841. doi: 10.3390/antibiotics10070841. PMID: 34356762; PMCID: PMC8300678.

Andrews V, Hasman H, Midttun M, Feldthaus MB, Porsbo LJ, Holzknecht BJ, Scheutz F, Hess CE, Olesen B. A hospital outbreak of an NDM-producing ST167 Escherichia coli with a possible link to a toilet. J Hosp Infect. 2021 Nov;117:186-187. doi: 10.1016/j.jhin.2021.08.023. Epub 2021 Sep 2. PMID: 34481891.

Angen Ø, Johannesen TB, Petersen RF, Uldum SA, Schnee C. Development of a species-specific real-time PCR test for Chlamydia psittaci and its employment in the investigation of zoonotic transmission from racing pigeons in Denmark. Diagn Microbiol Infect Dis. 2021 Jun;100(2):115341. doi: 10.1016/j.diagmicrobio.2021.115341. Epub 2021 Feb 9. PMID: 33684659.

Angen Ø, Nielsen MW, Løfstrøm P, Larsen AR, Hendriksen NB. Airborne spread of methicillin resistant Staphylococcus aureus from a swine farm. Front Vet Sci. 2021 Jun 4;8:644729. doi: 10.3389/fvets.2021.644729. PMID: 34150881; PMCID: PMC8211894.

Belkessa S, Ait-Salem E, Laatamna A, Houali K, Sönksen UW, Hakem A, Bouchene Z, Ghalmi F, Stensvold CR. Prevalence and clinical manifestations of Giardia intestinalis and other intestinal parasites in children and adults in Algeria. Am J Trop Med Hyg. 2021 Jan 18;104(3):910-916. doi: 10.4269/ajtmh.20-0187. PMID: 33534771; PMCID: PMC7941827.

Birkelund T, Johansen RF, Illum DG, Dyrskog SE, Østergaard JA, Falconer TM, Andersen C, Fridholm H, Overballe-Petersen S, Jensen JS. Fatal 3-nitropropionic acid poisoning after consuming coconut water. Emerg Infect Dis. 2021 Jan;27(1):278-280. doi: 10.3201/eid2701.202222. PMID: 33350928; PMCID: PMC7774558.

Butt JH, Fosbøl EL, Verhamme P, Gerds TA, Iversen K, Bundgaard H, Bruun NE, Larsen AR, Petersen A, Andersen PS, Skov RL, Gislason GH, Torp-Pedersen C, Køber L, Olesen JB. Dabigatran and the risk of Staphylococcus aureus bacteremia: a nationwide cohort study. Clin Infect Dis. 2021 Aug 2;73(3):480-486. doi: 10.1093/cid/ciaa661. PMID: 32478836.

Bünsow D, Tantawy E, Ostermeier T, Bähre H, Garbe A, Larsen J, Winstel V. Methicillin-resistant Staphylococcus pseudintermedius synthesizes deoxyadenosine to cause persistent infection. Virulence. 2021 Dec;12(1):989-1002. doi: 10.1080/21505594.2021.1903691. PMID: 33779509; PMCID: PMC8018352.

Cohen LM, Bossé JT, Stegger M, Li Y, Langford PR, Kielland C, Klem TB, Gulliksen SM, Ranheim B, Grøntvedt CA, Angen Ø. Comparative genome sequence analysis of Actinobacillus pleuropneumoniae serovar 8 isolates from Norway, Denmark, and the United Kingdom indicates distinct phylogenetic lineages and differences in distribution of antimicrobial resistance genes. Front Microbiol. 2021 Sep 10;12:729637. doi: 10.3389/fmicb.2021.729637. PMID: 34566934; PMCID: PMC8461171.

Du X, Larsen J, Li M, Walter A, Slavetinsky C, Both A, Sanchez Carballo PM, Stegger M, Lehmann E, Liu Y, Liu J, Slavetinsky J, Duda KA, Krismer B, Heilbronner S, Weidenmaier C, Mayer C, Rohde H, Winstel V, Peschel A. Staphylococcus epidermidis clones express Staphylococcus aureus-type wall teichoic acid to shift from a commensal to pathogen lifestyle. Nat Microbiol. 2021 Jun;6(6):757-768. doi: 10.1038/s41564-021-00913-z. Epub 2021 May 24. PMID: 34031577.

EFSA Panel on Biological Hazards (BIOHAZ); Koutsoumanis K, Allende A, Álvarez-Ordóñez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, De Cesare A, Herman L, Hilbert F, Lindqvist R, Nauta M, Ru G, Simmons M, Skandamis P, Suffredini E, Argüello H, Berendonk T, Cavaco LM, Gaze W, Schmitt H, Topp E, Guerra B, Liébana E, Stella P, Peixe L. Role played by the environment in the emergence and spread of antimicrobial resistance (AMR) through the food chain. EFSA J. 2021 Jun 17;19(6):e06651. doi: 10.2903/j.efsa.2021.6651. PMID: 34178158; PMCID: PMC8210462.

Espenhain L, Tribler S, Sværke Jørgensen C, Holm Hansen C, Wolff Sönksen U, Ethelberg S. Prevalence of SARS-CoV-2 antibodies in Denmark: nationwide, population-based seroepidemiological study. Eur J Epidemiol. 2021 Jul;36(7):715-725. doi: 10.1007/s10654-021-00796-8. Epub 2021 Aug 22. PMID: 34420152; PMCID: PMC8380416.

Fišarová L, Botka T, Du X, Mašlaňová I, Bárdy P, Pantůček R, Benešík M, Roudnický P, Winstel V, Larsen J, Rosenstein R, Peschel A, Doškař J. Staphylococcus epidermidis phages transduce antimicrobial resistance plasmids and mobilize chromosomal islands. mSphere. 2021 May 12;6(3):e00223-21. doi: 10.1128/mSphere.00223-21. PMID: 33980677; PMCID: PMC8125051.

Gagliotti C, Högberg LD, Billström H, Eckmanns T, Giske CG, Heuer OE, Jarlier V, Kahlmeter G, Lo Fo Wong D, Monen J, Murchan S, Simonsen GS, Šubelj M, Andrašević AT, Żabicka D, Žemličková H, Monnet DL; EARS-Net study group participants. Staphylococcus aureus bloodstream infections: diverging trends of meticillin-resistant and meticillin-susceptible isolates, EU/EEA, 2005 to 2018. Euro Surveill. 2021 Nov;26(46):2002094. doi: 10.2807/1560-7917.ES.2021.26.46.2002094. PMID: 34794536; PMCID: PMC8603406.

Hallgren MB, Overballe-Petersen S, Lund O, Hasman H, Clausen PTLC. MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads. Biol Methods Protoc. 2021 Apr 21;6(1):bpab008. doi: 10.1093/biomethods/bpab008. PMID: 33981853; PMCID: PMC8106442.

Ingham AC, Urth TR, Sieber RN, Stegger M, Edslev SM, Angen Ø, Larsen AR. Dynamics of the human nasal microbiota and Staphylococcus aureus CC398 carriage in pig truck drivers across one workweek. Appl Environ Microbiol. 2021 Aug 26;87(18):e0122521. doi: 10.1128/AEM.01225-21. Epub 2021 Aug 26. PMID: 34191530; PMCID: PMC8388827.

Kalová A, Gelbíčová T, Overballe-Petersen S, Litrup E, Karpíšková R. Characterisation of colistin-resistant Enterobacterales and Acinetobacter strains carrying mcr genes from Asian aquaculture products. Antibiotics (Basel). 2021 Jul 9;10(7):838. doi: 10.3390/antibiotics10070838. PMID: 34356760; PMCID: PMC8300808.

Kjær Hansen S, Andersen L, Detlefsen M, Holm A, Roer L, Antoniadis P, Skov MN, Hammerum AM, Kemp M. Using core genome multilocus sequence typing (cgMLST) for vancomycin-resistant Enterococcus faecium isolates to guide infection control interventions and end an outbreak. J Glob Antimicrob Resist. 2021 Mar;24:418-423. doi: 10.1016/j.jgar.2021.02.007. Epub 2021 Feb 19. PMID: 33618041.

Larsen HD, Fonager J, Lomholt FK, Dalby T, Benedetti G, Kristensen B, Urth TR, Rasmussen M, Lassaunière R, Rasmussen TB, Strandbygaard B, Lohse L, Chaine M, Møller KL, Berthelsen AN, Nørgaard SK, Sönksen UW, Boklund AE, Hammer AS, Belsham GJ, Krause TG, Mortensen S, Bøtner A, Fomsgaard A, Mølbak K. Preliminary report of an outbreak of SARS-CoV-2 in mink and mink farmers associated with community spread, Denmark, June to November 2020. Euro Surveill. 2021 Feb;26(5):2100009. doi: 10.2807/1560-7917.ES.2021.26.5.210009. PMID: 33541485; PMCID:PMC7863232.

Larsen SAH, Kyhl K, Baig S, Petersen A, Av Steinum MR, Clemmensen S, Jensen E, Á Steig T, Gaini S. Life-threatening necrotizing pneumonia with Panton-Valentine leukocidin-producing, methicillin-sensitive Staphylococcus aureus in a healthy male co-infected with nfluenza B. Infect Dis Rep. 2021 Dec 26;14(1):12-19. doi: 10.3390/idr14010002. PMID: 35076575; PMCID: PMC8788275.

Leinweber H, Sieber RN, Larsen J, Stegger M, Ingmer H. Staphylococcal phages adapt to new hosts by extensive attachment site variability. mBio. 2021 Dec 21;12(6):e0225921. doi: 10.1128/mBio.02259-21. Epub 2021 Dec 7. PMID: 34872344; PMCID: PMC8649754.

Mood EH, Goltermann L, Brolin C, Cavaco LM, Nejad AJ, Yavari N, Frederiksen N, Franzyk H, Nielsen PE. Antibiotic potentiation in multidrug-resistant Gram-negative pathogenic bacteria by a synthetic peptidomimetic. ACS Infect Dis. 2021 Aug 13;7(8):2152-2163. doi: 10.1021/acsinfecdis.1c00147. Epub 2021 Jul 6. PMID: 34227804.

Möller V, Östholm-Balkhed Å, Berild D, Fredriksson M, Gottfredsson M, Holmbom M, Järvinen A, Kristjansson M, Rydell U, Sönksen UW, Kolmos HJ, Hanberger H. Antibiotic resistance among major pathogens compared to hospital treatment guidelines and antibiotic use in Nordic hospitals 2010-2018. Infect Dis (Lond). 2021 Aug;53(8):607-618. doi: 10.1080/23744235.2021.1910338. Epub 2021 May 10. PMID: 33970737.

Nielsen HL, Thomsen PK, Litrup E, Torpdahl M, Overballe-Petersen S, Hansen F, Christensen AKS, Hasman H. A case of blaNDM-1-positive Salmonella Kottbus, Denmark, November 2020. Euro Surveill. 2021 Jul;26(26):2100569. doi: 10.2807/1560-7917.ES.2021.26.26.2100569. PMID: 34212839; PMCID: PMC8326659.

Nielsen KL, Stegger M, Kiil K, Lilje B, Ejrnæs K, Leihof RF, Skjøt-Rasmussen L, Godfrey P, Monsen T, Ferry S, Hammerum AM, Frimodt-Møller N. Escherichia coli causing recurrent urinary tract infections: comparison to non-recurrent isolates and genomic adaptation in recurrent infections. Microorganisms. 2021 Jun 30;9(7):1416. doi: 10.3390/microorganisms9071416. PMID: 34209190; PMCID: PMC8303582.

Petersen A, Larssen KW, Gran FW, Enger H, Hæggman S, Mäkitalo B, Haraldsson G, Lindholm L, Vuopio J, Henius AE, Nielsen J, Larsen AR. Increasing incidences and clonal diversity of methicillin-resistant Staphylococcus aureus in the Nordic Countries - results from the Nordic MRSA surveillance. Front Microbiol. 2021 Apr 30;12:668900. doi: 10.3389/fmicb.2021.668900. PMID: 33995333; PMCID: PMC8119743.

Pinholt M, Mollerup S, Boye K, Worning P, Holzknecht BJ, Nygaard S, Nielsen KL, Hasman H, Roer L, Hammerum AM, Westh H, Schønning K. Investigation of the introduction and dissemination of vanB Enterococcus faecium in the Capital Region of Denmark and development of a rapid and accurate clone-specific vanB E. faecium PCR. J Antimicrob Chemother. 2021 Aug 12;76(9):2260-2267. doi: 10.1093/jac/dkab198. PMID: 34151364.

Randad PR, Larsen J, Kaya H, Pisanic N, Ordak C, Price LB, Aziz M, Nadimpalli ML, Rhodes S, Stewart JR, Love DC, Mohr D, Davis MF, Miller LS, Hall D, Carroll KC, Perl TM, Heaney CD. Transmission of antimicrobial-resistant Staphylococcus aureus clonal complex 9 between pigs and humans, United States. Emerg Infect Dis. 2021 Mar;27(3):740-748. doi: 10.3201/eid2703.191775. PMID: 33622471; PMCID: PMC7920674.

Rhodes S, Christenson E, Nguyen A, Larsen J, Price LB, Stewart J. Getting ahead of antibiotic-resistant Staphylococcus aureus in U.S. hogs. Environ Res. 2021 May;196:110954. doi: 10.1016/j.envres.2021.110954. Epub 2021 Mar 4. PMID: 33676950; PMCID: PMC8119327.

Robertson J, Vlahović-Palčevski V, Iwamoto K, Högberg LD, Godman B, Monnet DL, Garner S, Weist K; ESAC-Net Study Group; WHO Europe AMC Network Study Group. Variations in the consumption of antimicrobial medicines in the European Region, 2014-2018: findings and implications from ESAC-Net and WHO Europe. Front Pharmacol. 2021 Jun 17;12:639207. doi: 10.3389/fphar.2021.639207. Erratum in: Front Pharmacol. 2021 Sep 30;12:765748. doi: 10.3389/fphar.2021.765748. PMID: 34220495; PMCID: PMC8248674.

Sharp A, Muller-Pebody B, Charlett A, Patel B, Gorton R, Lambourne J, Cummins M, Alcolea-Medina A, Wilks M, Smith R, Mack D, Hopkins S, Dodgson A, Burns P, Perera N, Lim F, Rao G, Khanna P, Johnson E, Borman A, Schelenz S, Guy R, Conneely J, Manuel RJ, Brown CS. Screening for Candida auris in patients admitted to eight intensive care units in England, 2017 to 2018. Euro Surveill. 2021 Feb;26(8):1900730. doi: 10.2807/1560-7917.ES.2021.26.8.1900730. PMID: 33632376; PMCID: PMC7908068.

Skov R, Lonsway DR, Larsen J, Larsen AR, Samulioniené J, Limbago BM. Evaluation of methods for detection of β-lactamase production in MSSA. J Antimicrob Chemother. 2021 May 12;76(6):1487-1494. doi: 10.1093/jac/dkab032. PMID: 33615356; PMCID: PMC9479532.

Stowe J, Tessier E, Zhao H, Guy R, Muller-Pebody B, Zambon M, Andrews N, Ramsay M, Lopez Bernal J. Interactions between SARS-CoV-2 and influenza, and the impact of coinfection on disease severity: a test-negative design. Int J Epidemiol. 2021 Aug 30;50(4):1124-1133. doi: 10.1093/ije08/dyab1. PMID: 33942104; PMCID: PMC8135706.

Stringer OW, Bossé JT, Lacouture S, Gottschalk M, Fodor L, Angen Ø, Velazquez E, Penny P, Lei L, Langford PR, Li Y. Proposal of Actinobacillus pleuropneumoniae serovar 19, and reformulation of previous multiplex PCRs for capsule-specific typing of all known serovars. Vet Microbiol. 2021 Apr;255:109021. doi: 10.1016/j.vetmic.2021.109021. Epub 2021 Feb 24. PMID: 33667982.

Stringer OW, Bossé JT, Lacouture S, Gottschalk M, Fodor L, Angen Ø, Velazquez E, Penny P, Lei L, Langford PR, Li Y. Rapid detection and typing of Actinobacillus pleuropneumoniae serovars directly from clinical samples: combining FTA® card technology with multiplex PCR. Front Vet Sci. 2021 Aug 10;8:728660. doi: 10.3389/fvets.2021.728660. PMID: 34447805; PMCID: PMC8382971.

Umair M, Mohsin M, Sönksen UW, Walsh TR, Kreienbrock L, Laxminarayan R. Measuring antimicrobial use needs global harmonization. Glob Chall. 2021 Jun 10;5(10):2100017. doi: 10.1002/gch2.202100017. PMID: 34631149; PMCID: PMC8495560.

van Hal SJ, Willems RJL, Gouliouris T, Ballard SA, Coque TM, Hammerum AM, Hegstad K, Westh HT, Howden BP, Malhotra-Kumar S, Werner G, Yanagihara K, Earl AM, Raven KE, Corander J, Bowden R; Enterococcal Group. The global dissemination of hospital clones of Enterococcus faecium. Genome Med. 2021 Mar 30;13(1):52. doi: 10.1186/s13073-021-00868-0. PMID: 33785076; PMCID: PMC8008517.

Westerholt M, Hasman H, Hansen DS, Roer L, Hansen TA, Petersen A, Holzknecht BJ. Screening patients at admission to Copenhagen hospitals for carriage of resistant bacteria after contact with healthcare systems abroad, 2016-2019. Int J Antimicrob Agents. 2021 Dec;58(6):106452. doi: 10.1016/j.ijantimicag.2021.106452. Epub 2021 Oct 11. PMID: 34648944.

2020

Angen Ø. Histophilus. In Whitman WB (ed) Bergey's Manual of Systematics of Archaea and Bacteria. 2020. doi: 10.1002/9781118960608.gbm01849.

Baig S, Rhod Larsen A, Martins Simões P, Laurent F, Johannesen TB, Lilje B, Tristan A, Schaumburg F, Egyir B, Cirkovic I, Nimmo GR, Spiliopoulou I, Blanc DS, Mernelius S, Moen AEF, David MZ, Andersen PS, Stegger M. Evolution and population dynamics of clonal complex 152 community-associated methicillin-resistant Staphylococcus aureus. mSphere. 2020 Jul 1;5(4):e00226-20. doi: 10.1128/mSphere.00226-20. PMID: 32611695; PMCID: PMC7333568.

Boisen N, Østerlund MT, Joensen KG, Santiago AE, Mandomando I, Cravioto A, Chattaway MA, Gonyar LA, Overballe-Petersen S, Stine OC, Rasko DA, Scheutz F, Nataro JP. Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains. PLoS Negl Trop Dis. 2020 Sep 8;14(9):e0008613. doi: 10.1371/journal.pntd.0008613. PMID: 32898134; PMCID: PMC7500659.

Boll EJ, Overballe-Petersen S, Hasman H, Roer L, Ng K, Scheutz F, Hammerum AM, Dungu A, Hansen F, Johannesen TB, Johnson A, Nair DT, Lilje B, Hansen DS, Krogfelt KA, Johnson TJ, Price LB, Johnson JR, Struve C, Olesen B, Stegger M. Emergence of enteroaggregative Escherichia coli within the ST131 lineage as a cause of extraintestinal infections. mBio. 2020 May 19;11(3):e00353-20. doi: 10.1128/mBio.00353-20. PMID: 32430467; PMCID: PMC7240153.

Bossé JT, Li Y, Fernandez Crespo R, Angen Ø, Holden MTG, Weinert LA, Maskell DJ, Tucker AW, Wren BW, Rycroft AN, Langford PR; BRaDP1T consortium. Draft genome sequences of the type strains of Actinobacillus indolicus (46K2C) and Actinobacillus porcinus (NM319), two NAD-dependent bacterial species found in the respiratory tract of pigs. Microbiol Resour Announc. 2020 Jan 2;9(1):e00716-19. doi: 10.1128/MRA.00716-19. PMID: 31896621; PMCID: PMC6940273.

Bybeck Nielsen A, Larsen AR, Petersen A, Schønheyder HC, Westh H, Benfield T, Nygaard U. Clinical manifestations in children with staphylococcal bacteremia positive for Panton-Valentine leucocidin: a nationwide survey in a low methicillin-resistance setting. Pediatr Infect Dis J. 2020 Sep;39(9):e274-e276. doi: 10.1097/INF.0000000000002722. PMID: 32496412.

Christensen H, Bossé J, Øystein A, Nørskov-Lauritsen N, Bisgaard M. Chapter 5 - Immunological and molecular techniques used for determination of serotypes in Pasteurellaceae. In Pavia CS, Gurtler V (eds) Immunological Methods in Microbiology. 2020; 47:117-149. doi: 10.1016/bs.mim.2020.01.002.

Egyir B, Hadjirin NF, Gupta S, Owusu F, Agbodzi B, Adogla-Bessa T, Addo KK, Stegger M, Larsen AR, Holmes MA. Whole-genome sequence profiling of antibiotic-resistant Staphylococcus aureus isolates from livestock and farm attendants in Ghana. J Glob Antimicrob Resist. 2020 Sep;22:527-532. doi: 10.1016/j.jgar.2020.03.029. Epub 2020 May 18. PMID: 32439567.

Gotland N, Uhre ML, Sandholdt H, Mejer N, Lundbo LF, Petersen A, Larsen AR, Benfield T. Increased risk of incident primary cancer after Staphylococcus aureus bacteremia: A matched cohort study. Medicine (Baltimore). 2020 Apr;99(17):e19984. doi: 10.1097/MD.0000000000019984. PMID: 32332684; PMCID: PMC7220765.

Hammerum AM, Lauridsen CAS, Blem SL, Roer L, Hansen F, Henius AE, Holzknecht BJ, Søes L, Andersen LP, Røder BL, Justesen US, Østergaard C, Søndergaard T, Dzajic E, Wang M, Fulgsang-Damgaard D, Møller KL, Porsbo LJ, Hasman H. Investigation of possible clonal transmission of carbapenemase-producing Klebsiella pneumoniae complex member isolates in Denmark using core genome MLST and National Patient Registry Data. Int J Antimicrob Agents. 2020 May;55(5):105931. doi: 10.1016/j.ijantimicag.2020.105931. Epub 2020 Mar 2. PMID: 32135203.

Hammerum AM, Porsbo LJ, Hansen F, Roer L, Kaya H, Henius A, Møller KL, Justesen US, Søes L, Røder BL, Thomsen PK, Wang M, Søndergaard TS, Holzknecht BJ, Østergaard C, Kjerulf A, Kristensen B, Hasman H. Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019. Euro Surveill. 2020 May;25(18):1900742. doi: 10.2807/1560-7917.ES.2020.25.18.1900742. PMID: 32400363; PMCID: PMC7219033.

Hansen JE, Stegger M, Pedersen K, Sieber RN, Larsen J, Larsen G, Lilje B, Chriél M, Andersen PS, Larsen AR. Spread of LA-MRSA CC398 in Danish mink (Neovison vison) and mink farm workers. Vet Microbiol. 2020 Jun;245:108705. doi: 10.1016/j.vetmic.2020.108705. Epub 2020 May 1. PMID: 32456821.

Hansen SK, Kaya H, Roer L, Hansen F, Skovgaard S, Justesen US, Hansen DS, Andersen LP, Knudsen JD, Røder BL, Østergaard C, Søndergaard T, Dzajic E, Wang M, Samulioniené J, Hasman H, Hammerum AM. Molecular characterization of Danish ESBL/AmpC-producing Klebsiella pneumoniae from bloodstream infections, 2018. J Glob Antimicrob Resist. 2020 Sep;22:562-567. doi: 10.1016/j.jgar.2020.05.014. Epub 2020 Jun 5. PMID: 32512235.

Holten Møller C, Andersson M, Rhod Larsen A, Petersen A, Mølbak K, Koch A. Risk of hospitalization and death within 2 years after methicillin-resistant Staphylococcus aureus (MRSA) diagnosis in persons colonized or infected with livestock and non-livestock-associated MRSA-A nationwide register-based cohort study. Zoonoses Public Health. 2020 Nov;67(7):814-822. doi: 10.1111/zph.12765. Epub 2020 Sep 19. PMID: 32949111.

Islam MZ, Johannesen TB, Lilje B, Urth TR, Larsen AR, Angen Ø, Larsen J. Investigation of the human nasal microbiome in persons with long- and short-term exposure to methicillin-resistant Staphylococcus aureus and other bacteria from the pig farm environment. PLoS One. 2020 Apr 30;15(4):e0232456. doi: 10.1371/journal.pone.0232456. PMID: 32353071; PMCID: PMC7192431.

Kämpfer P, Fuglsang-Damgaard D, Overballe-Petersen S, Hasman H, Hammerum AM, Fuursted K, Blom J, Glaeser SP, Hansen F. Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov. Int J Syst Evol Microbiol. 2020 Feb;70(2):1315-1320. doi: 10.1099/ijsem.0.003918. PMID: 31860429.

Larsen AR, Larsen J. Arthritis caused by MRSA CC398 in patient without animal contact, Japan. Emerg Infect Dis. 2020 Dec;26(12):3104-3105. doi: 10.3201/eid2612.202780. PMID: 33219813; PMCID: PMC7706922.

Looman EL, van Tienen P, Ng DYK, Baig S, Fait A, Overballe-Petersen S, Andersen PS, Stegger M. Complete genome of a methicillin-resistant Staphylococcus vitulinus from Danish ground beef meat carrying a mecA2 resistance gene and a novel ccr allotype. J Glob Antimicrob Resist. 2020 Dec;23:221-223. doi: 10.1016/j.jgar.2020.09.013. Epub 2020 Oct 8. PMID: 33039598.

Ludden C, Lötsch F, Alm E, Kumar N, Johansson K, Albiger B, Huang TD, Denis O, Hammerum AM, Hasman H, Jalava J, Räisänen K, Dortet L, Jousset AB, Gatermann S, Haller S, Cormican M, Brennan W, Del Grosso M, Monaco M, Schouls L, Samuelsen Ø, Pirš M, Cerar T, Oteo-Iglesias J, Pérez-Vázquez M, Sjöström K, Edquist P, Hopkins KL, Struelens MJ, Palm D, Monnet DL, Kohlenberg A. Cross-border spread of blaNDM-1- and blaOXA-48-positive Klebsiella pneumoniae: a European collaborative analysis of whole genome sequencing and epidemiological data, 2014 to 2019. Euro Surveill. 2020 May;25(20):2000627. doi: 10.2807/1560-7917.ES.2020.25.20.2000627. PMID: 32458791; PMCID: PMC7262493.

Mellergaard M, Høgh RI, Lund A, Aldana BI, Guérillot R, Møller SH, Hayes AS, Panagiotopoulou N, Frimand Z, Jepsen SD, Hansen CHF, Andresen L, Larsen AR, Peleg AY, Stinear TP, Howden BP, Waagepetersen HS, Frees D, Skov S. Staphylococcus aureus induces cell-surface expression of immune stimulatory NKG2D ligands on human monocytes. J Biol Chem. 2020 Aug 14;295(33):11803-11821. doi: 10.1074/jbc.RA120.012673. Epub 2020 Jun 30. PMID: 32605922; PMCID: PMC7450114.

Mutters R, Angen Ø, Bisgaard M. Mannheimia. In Whitman WB (ed) Bergey's Manual of Systematics of Archaea and Bacteria. 2020. doi: 10.1002/9781118960608.gbm01200.pub2.

Roer L, Hansen F, Hasman H, Hammerum AM, Cavaco LM. Characterisation of extended-spectrum β-lactamase/plasmid AmpC-β-lactamase-producing Escherichia coli isolates from long-term recurrent bloodstream infections. Int J Antimicrob Agents. 2020 Jul;56(1):106041. doi: 10.1016/j.ijantimicag.2020.106041. Epub 2020 May 30. PMID: 32479890.

Sieber RN, Overballe-Petersen S, Kaya H, Larsen AR, Petersen A. Complete genome sequences of methicillin-resistant Staphylococcus aureus strains 110900 and 128254, two representatives of the CRISPR-Cas-carrying sequence type 630/spa type t4549 lineage. Microbiol Resour Announc. 2020 Oct 8;9(41):e00891-20. doi: 10.1128/MRA.00891-20. PMID: 33033131; PMCID: PMC7545285.

Sieber RN, Urth TR, Petersen A, Møller CH, Price LB, Skov RL, Larsen AR, Stegger M, Larsen J. Phage-mediated immune Evasion and transmission of livestock-associated methicillin-resistant Staphylococcus aureus in humans. Emerg Infect Dis. 2020 Nov;26(11):2578–85. doi: 10.3201/eid2611.201442. PMID: 33079052; PMCID: PMC7588543.

Wirth T, Bergot M, Rasigade JP, Pichon B, Barbier M, Martins-Simoes P, Jacob L, Pike R, Tissieres P, Picaud JC, Kearns A, Supply P, Butin M, Laurent F; International Consortium for Staphylococcus capitis neonatal sepsis; ESGS Study Group of ESCMID. Niche specialization and spread of Staphylococcus capitis involved in neonatal sepsis. Nat Microbiol. 2020 May;5(5):735-745. doi: 10.1038/s41564-020-0676-2. Epub 2020 Apr 27. PMID: 32341568.

Wolf-Jäckel GA, Boye M, Angen Ø, Müller M, Jensen TK. Fluorescence in situ hybridization in species-specific diagnosis of ovine Campylobacter abortions. J Vet Diagn Invest. 2020 May;32(3):413-419. doi: 10.1177/1040638720915678. Epub 2020 Apr 10. PMID: 32274977; PMCID: PMC7377615.

Yusibova M, Hasman H, Clausen PTLC, Imkamp F, Wagner K, Andersen LP. CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole-genome sequencing data. Helicobacter. 2020 Dec;25(6):e12752. doi: 10.1111/hel.12752. Epub 2020 Aug 26. PMID: 32844531.